| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 13331 |
| Atlantic Sahara Coast | River (basin) | native | 112399 |
| Bandama | River (basin) | native | 53405 |
| Bia | River (basin) | native | 53405 |
| Casamance | River (basin) | native | 53405 |
| Cavally | River (basin) | native | 13331 |
| Cess | River (basin) | native | 272 |
| Chiloango | River (basin) | native | 120641 |
| Comoé | River (basin) | native | 53405 |
| Congo | River (basin) | native | 55074 |
| Corubal | River (basin) | native | 13331 |
| Cross | River (basin) | native | 81260 |
| Cuanza | River (basin) | native | 81260 |
| Ébrié | Lagoon | native | 28587 |
| Ethiopian | Zoogeographic realm | endemic | 33587 |
| Fatala | River (basin) | native | 28587 |
| Gambia | River (basin) | native | 13331 |
| Géba | River (basin) | native | 13331 |
| Great Scarcies | River (basin) | native | 53405 |
| Kogon | River (basin) | native | 53405 |
| Konkouré | River (basin) | native | 53405 |
| Little Scarcies | River (basin) | native | 13331 |
| Lofa | River (basin) | native | 13331 |
| Marine Lower Congo | River (basin) | native | 55074 |
| Mono | River (basin) | native | 53405 |
| Niger | River (basin) | native | 53405 |
| Ogowe | River (basin) | native | 81260 |
| Ogun | River (basin) | native | 13331 |
| Ouémé | River (basin) | native | 53405 |
| Palearctic | Zoogeographic realm | introduced | 5163 |
| Pra | River (basin) | native | 53405 |
| Rokel | River (basin) | native | 13331 |
| Saint John | River (basin) | native | 13331 |
| Saint Paul | River (basin) | native | 13331 |
| Saloum | River (basin) | native | 28587 |
| Sanaga | River (basin) | native | 81260 |
| Sassandra | River (basin) | native | 53405 |
| Senegal | River (basin) | native | 53405 |
| Tano | River (basin) | native | 13331 |
| Volta | River (basin) | native | 53405 |