| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agnébi | River (basin) | native | 86396 |
| Bandama | River (basin) | native | 86396 |
| Benue | River (basin) | native | 86396 |
| Bia | River (basin) | native | 86396 |
| Casamance | River (basin) | native | 86396 |
| Cavally | River (basin) | native | 86396 |
| Cess | River (basin) | native | 86396 |
| Chad | River (basin) | native | 86396 |
| Chiloango | River (basin) | native | 94734 |
| Comoé | River (basin) | native | 86396 |
| Congo | River (basin) | native | 94734 |
| Corubal | River (basin) | native | 86396 |
| Cross | River (basin) | native | 81638 |
| Ethiopian | Zoogeographic realm | endemic | 2936 |
| Gambia | River (basin) | native | 86396 |
| Géba | River (basin) | native | 13331 |
| Great Scarcies | River (basin) | native | 13331 |
| Kainji | Lake | native | 86396 |
| Kouilou-Niari | River (basin) | native | 81638 |
| Léfini-Likouala | River (basin) | native | 42035 |
| Lofa | River (basin) | native | 86396 |
| Niger | River (basin) | native | 86396 |
| Ntem | River (basin) | native | 81638 |
| Nyanga | River (basin) | native | 81638 |
| Nyong | River (basin) | native | 81638 |
| Ogowe | River (basin) | native | 81638 |
| Ouémé | River (basin) | native | 13331 |
| Pampana | River (basin) | native | 86396 |
| Pra | River (basin) | native | 86396 |
| Rio del Rey | River (basin) | native | 81638 |
| Saint Paul | River (basin) | native | 86396 |
| San Pedro | River (basin) | native | 86396 |
| Sanaga | River (basin) | native | 81638 |
| Sangha | River (basin) | native | 51193 |
| Sassandra | River (basin) | native | 86396 |
| Sewa | River (basin) | native | 86396 |
| Sio | River (basin) | native | 3045 |
| Tano | River (basin) | native | 86396 |
| Ubangui | River (basin) | native | 7094 |
| Volta | River (basin) | native | 86396 |