| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Australian | Zoogeographic realm | native | 41819 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 9812 |
| Ethiopian | Zoogeographic realm | native | 27471 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 1602 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| North Australian Shelf | Sea/Bay/Gulf | native | 9812 |
| Oriental | Zoogeographic realm | native | 36654 |
| Pacific Ocean | Sea/Bay/Gulf | native | 9812 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Polynesian Waters | Sea/Bay/Gulf | native | 9812 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Taal Lake | Lake | native | 12165 |